Thursday, March 5, 2020

Three Things All Governments Should Do to Confront a Pandemic


There are 3 important things that any government must do if it wishes to survive a pandemic.

1. Provide Accurate and Truthful Information

Any government should provide accurate, current, and truthful information about the pandemic. Certainly, as a pandemic unfolds the situation changes rapidly. Government agencies and spokespeople should acknowledge the fluidity of the situation. Providing conflicting information from various agencies will lead to confusion among the general population. Covering up or misleading the public will lead to distrust of official announcements and recommendations. Dismissing or downplaying the serious potential of a pandemic can lead to fear and general anxiety. Failure of the government to provide truthful and accurate information can lead to panic and possibly mass hysteria. 

What can be done?

Provide a unified voice from the government by public health officials who understand what is going on and have credibility with the public.  Let these public health officials speak freely and honestly about the parameters of the pandemic. Provide a daily update to the public by these individuals.

A government should set up a national hotline with knowledgeable government employees taking calls and responding to any and all questions relating to the pandemic. Nothing can be more reassuring than talking to another human being about concerns and actions to take as a pandemic progresses.

2. Provide Supplies and Protection for Health Care Workers

A pandemic is a foreign invader, it cannot be stopped by soldiers or generals. The front-line defense against a pandemic are all of the healthcare workers and their support staff. These individuals include doctors, nurses, medical technicians, laboratory support staff, first responders, and the support and maintenance staff of health facilities.  

Healthcare staff and facilities around the world are working at capacity even before a pandemic begins. Healthcare staff of all specialties will be pressed into service to aid in treatment of pandemic cases. A pandemic will overwhelm staff and facilities. Just because there is a pandemic, regular medical issues will not go away. In addition to treating the influx of pandemic patients, other medical aspects such as caring for acute trauma, monitoring chronic conditions, assisting in births, etc. will continue to be necessary. 

What can be done?

The government should be responsible for making sure that adequate supplies such as masks, gowns, gloves, are available to all staff. Ample supplies of medications and tests should also be available. These health care workers need to be assured that they have all the resources they need to treat patients and not get sick themselves.

Health care workers should not be burdened by paperwork exercises, filling out forms, and looking up insurance codes. They should be 100% focused on taking care of sick people. 

Healthcare workers are the soldiers of a pandemic crisis. They can be subject to anxiety and psychological stress such as PTSD just like any other soldier. The government should do all it can to lessen the physical and psychological pressures and provide extensive crisis management for these healthcare workers.  

3. Have a Clear Pandemic Plan 

The government needs to have a clear public plan in place for dealing with the myriad of problems that accompany a pandemic. Does the government have a rational plan for quelling concerns among the population? Is it ready to bolster weak links in the supply chain to ensure that critical infrastructure remains intact? Will adequate supplies of food, water, electricity, gas, and oil be properly delivered to people who are in desperate need?

What can be done?

The government needs to have a coherent communication plan in place if various avenues of official news and information are disrupted.  One thing the government can do minimize the effect of a pandemic is to make sure that all treatment for the disease is free, no one should have to pay for treatment. Everyone should have equal opportunity for treatment and recovery. Any vaccination, when it becomes available, should be free to every citizen. 

A pandemic will eventually end. At that time the government will be responsible for bringing the broken pieces of the economy and society back together again. The government will need to have a massive deficit spending plan to jump start the economy once the pandemic is over. Extensive spending will be necessary to put people back to work and to bolster the supply chain and infrastructure in order return to a semblance regular life. Only then will the populations have the faith that things will eventually return to normal.


Any government that does not address these 3 issues will not instill confidence in the general public. It would demonstrate that the government is incapable of managing a pandemic crisis. Failure to manage a pandemic crisis could result in more infections, poorer treatment, greater loss of life, and perhaps  even a permanent lowering of the standard of living.

Sunday, January 26, 2020

Rapidly spreading 2019 nCoV outbreak


The 2019-nCoV outbreak is rapidly spreading across China. There have been more than 2000 cases reported among almost all the provinces in China since mid-January.  At least 54 confirmed cases have been imported into 14 other countries or administrative regions.  Five of these cases have been imported into 5 different counties in the United States. See maps below.






Friday, January 24, 2020

The Third Major Novel Coronavirus Outbreak This Century (2019-nCoV)

The Third Major Novel Coronavirus Outbreak This Century (2019-nCoV)

Once again for the 3rd time in this century, public health officials are battling a novel coronavirus (2019-nCoV) that originated in China in December 2019.  In 2003 the Severe Acute Respiratory Syndrome (SARS) outbreak was attributed to a coronavirus that originated in bats but was apparently passed from civets to humans in Guangdong Province in China. During that outbreak more than 7,500 people from 17 countries were infected with about 775 deaths blamed on SARS.

In 2012 a novel coronavirus began infecting people on the Arabian Peninsula. The Middle East Respiratory Syndrome (MERS) was eventually attributed to camels as an intermediate host passing on the MERS coronavirus to humans.  Since 2012 more than 2500 people have been infected with more than 850 associated deaths. While the SARS coronavirus has not infected anyone during the past 15 years, MERS is still circulating and continues to cause human illness and death. As noted by Kayvon Modjarrad (link) in 2016, treatment options for SARS  were never clearly defined so that when MERS appeared treatment options were limited as well.

In December 2019 a novel coronavirus began infecting people in Wuhan, Hubei province, in China. This coronavirus outbreak originated as the preceding two this century. A few cases here and there become sick exhibiting symptoms similar to pneumonia. Eventually local public health officials noticed a pattern in the symptoms of sick individuals who worked at or shopped in a wet market in the City of Wuhan where a variety of animals were processed and sold. Suspicion soon focused on coronaviruses because they are found in many animal species and can occasionally infect humans.


Within a few weeks Chinese researchers had isolated a new coronavirus called 2019-nCoV (2019 novel CoronaVirus) from sick individuals. The scientist quickly developed a test to rapidly identify the presence of this coronavirus in a sick individual.

During the initial days of this outbreak, there was uncertainty about whether or not all of the human cases resulted from exposure to infected animals. However, the rapid growth in confirmed cases in China demonstrates that human-to-human transmission is now the main source of the spread of this disease. Since the 11th of January, the number of reported, confirmed cases has risen about 20-fold. The chart below shows the growth of confirmed cases in the past 13 days from about 40 cases to more than 860 cases. This rate of infection, if it is unimpeded, could see the number of cases rise to 1500 tomorrow and 2500 the day after. These are only crude estimates, but there is little reason to suspect that number of confirmed cases in going to start declining precipitously in the near future.



Saturday, August 5, 2017

The Spread of H7N9 in China



Hong Kong’s Centre for Health Protection weekly Avian Influenza Report published on August 1 is the first weekly report in 2017 with no reported human H7N9 cases from the Republic of China. The last weekly Avian Influenza Report with no reported H7N9 cases was previously published on December 1, 2016. In the intervening 8 months more than 750 human H7N9 cases were reported from China. This is an extremely large number of human infections in a short time period.

Human cases of H7N9 were first identified and reported from China late in the 2012-2013 influenza season. Since then, there have been several waves of human H7N9 infections generally corresponding with seasonal influenza outbreaks. Although human cases of H7N9 have been sporadically reported over the past four years, the 750+ cases reported in the last eight months represent about 49% of all reported H7N9 cases. To date, all human infections have occurred in China although some individuals infected in China were identified in other countries. 

   Chart: Number of human H7N9 cases by influenza season.

As depicted in the maps below, between 13 and 16 provinces, autonomous areas, or municipalities were reporting H7N9 cases during these previous waves on a seasonal basis. This recent wave with over 750 cases, the 2016-2017 influenza season, struck China particularly hard. All provinces, autonomous areas, municipalities, or special administrative regions in China with the exception of Hainan, Heilongjiang, Qinghai, and Ningxia Hui reported at least one human H7N9 case during the past influenza season.


Map: Distribution of human H7N9 cases in China in early 2013.

Map: Distribution of human H7N9 cases in China in the 2013-2014 influenza season.


Map: Distribution of human H7N9 cases in China in the 2014-2015 influenza season.

 Map: Distribution of human H7N9 cases in China in the 2015-2016 influenza season.

Map: Distribution of human H7N9 cases in China in the 2016-2017 influenza season.

Almost all of these recent H7N9 infections are attributed to contact with infected poultry; human to human transmission is apparently very rare. There is very little public information about the distribution of low pathogenicity avian influenza (LPAI) H7N9 among domestic poultry in China. However, we can deduce from the extensive geographic distribution of human H7N9 in China this past season, that H7N9 is wide spread and perhaps endemic in poultry flocks in China.

Domestic poultry may soon be infected in adjoining countries of Myanmar, Laos, and Vietnam.  Human cases from these countries in the future would not be surprising. With the next influenza season officially starting in a few weeks, we can anticipate that additional human H7N9 cases will be reported from China in the upcoming influenza season.

Wednesday, March 1, 2017

The Current Status of the 2016 – 2017 H7N9 Outbreak in China as of March 1, 2017 (Is the Outbreak Just About Over?)



For the purposes of this discussion the current outbreak of H7N9 began November 1, 2016 and is still continuing. More than 460 human cases have been reported from China. Of these cases, 426 have symptom onset dates reported by the World Health Organization (WHO) for cases with onset before February 10, 2017.

Graphing the symptom onset dates for these H7N9 cases provides a count of new daily infections of H7N9. Also included in the graph are the remaining 37 cases based on their reporting date rather than symptom onset date which is not available at this time for cases reported after February 11. The graph, an epidemic curve, shows that the greatest number of H7N9 infections occurred on February 1, 2017, based on a five day moving average.

Even if The 37 cases for which symptom onset dates are not available are distributed over the 17 days following February 11, they are an insufficient number of new cases to exceed the five-day moving average which peaked above 10 cases per day on February 1, 2017. The number of human H7N9 infections in this outbreak now seems to be declining. The decline in human cases can be attributed to closing of some local poultry markets by Chinese authorities. Hopefully, the number of H7N9 infections will continue to decrease.


While there is little evidence of human-to-human transmission in this outbreak, every human H7N9 infection is a potential opportunity for the influenza virus to reassort and become transmissible between humans.

The Current Status of the 2016 – 2017 H7N9 Outbreak in China as of March 1, 2017 (Geographic Distribution)



As noted in the previous post, there have been at least 460 human cases of H7N9 reported in the current H7N9 outbreak between November 1, 2016 and February 27, 2017. Of great concern is a possibility that many of these cases are a result of human-to-human transmission. There is little publicly available information about the relationships, if any, among these hundreds of cases. To date, only four two-person clusters have been reported by the World Health Organization (WHO, January 17 and February 20) with family members comprising three of the clusters. For all four of these clusters, the WHO notes that human-to-human transmission cannot be ruled out.

One important clue to the nature of the outbreak is the geographic distribution of the reported cases. An indirect signal of human-to-human transmission can be multiple cases occurring in a localized geographic area within a short period of time. The recent WHO line listing of H7N9 cases from China (Influenza at the Human Animal Interface: Summary and Assessment, February 14, 2017), only provides the province or region for each of the reported cases. Line lists of cases provided by the Centre for Health Protection (CHP) Weekly Influenza Report provide additional geographic locational information to the prefecture level (administrative level 2) for individual cases. The Food and Agricultural Organization of the United Nations (FAO) line list of H7N9 cases occasionally provides the geographic locale of the county or administrative level 3 for some individual cases.

The most accurate locational information for individual cases is reported in local public health reports on Chinese websites. This information has been translated to English by members at FluTrackers. Sharon Sanders at FluTrackers has linked to these translated reports in the FluTrackers running list of H7N9 cases. Unfortunately, local publication of data of confirmed H7N9 cases in China are infrequent, so geographic details about individual cases beyond administrative level 2, the prefecture level, are limited to only a handful of the reported cases in this outbreak.

However, even with limited geo-locational information for individual H7N9 cases, the geographic distribution of cases can be plotted and is very informative. The map below provides a heat map of the distribution of cases in eastern China computed from the prefecture level data. Overlaid on this map are plotted locations of individual cases. The map shows the concentrations of cases in the 2016-2017 H7N9 outbreak in the provinces of Jiangsu, Zhejiang, Anhui, and Guangdong. In southern Jiangsu, hot spots include Suzhou, Wuxi, Taizhou, and Changzhou. In northern and eastern Zhejiang, the hot spots are Hangzhou, Ningbo, and Wenzhou. Hefei is the hot spot in central Anhui province and in central Guangdong, Guangzhou is the location with the most reported infections.

This map also shows that cases are widely scattered throughout many provinces during the current outbreak. The widely dispersed nature of these cases provides indirect support that human-to-human transmission is not occurring in these areas and the infections are resulting primarily from animal-to-human transmission. Even the increased number of cases in the hot spot locations does not mean that human-to-human transmission is occurring. The prefecture level cities mentioned above have very large populations most exceeding several million people. Were human-to-human transmission occurring in these areas we would expect many more reported cases.

The Current Status of the 2016 – 2017 H7N9 Outbreak in China as of March 1, 2017 (Case Count)



Since November 2016, more than 460 human cases of H7N9 have been reported or imported from China. To put this number in perspective, confirmed cases of H7N9 were first reported in March 2013, four years ago. Of all the cases of human H7N9 infections reported to date, more than one-third (about 36%), have occurred in the last four months. This raises a concern that H7N9 is not only causing outbreaks in China but could lead to epidemics and perhaps even a pandemic.

It is difficult to tabulate exactly how many H7N9 cases have occurred since November 1 of 2016, because case reporting and enumeration seem to vary among various public health reporting agencies. Media and blog reports have interpreted variation among these counts of H7N9 cases as a failure of public health officials in China to accurately track H7N9 cases, often leading to exaggerated claims of the rates of infection in China.

It is possible to arrive at a close approximation of the actual number of recent cases by using different data sources. Official counts of human cases of H7N9 are individually presented by the Food and Agricultural Organization of the United Nations (FAO), the Centre for Health Protection (CHP), and the World Health Organization (WHO). The discrepancies between these different agencies can be attributed to differential reporting periods. The FAO updates its list of human H7N9 infections every few days or whenever newly confirmed cases are reported. The CHP only updates its case information every seven days in the Weekly Influenza Report. The WHO only provides irregular updates, often only in aggregate fashion in the Disease Outbreak News. Later the WHO usually provides case details in its Influenza at the Human Animal Interface: Summary and Assessment that is only published on a monthly basis.

In order to compare these three data sets we need to have a starting point. The current outbreak in China started in November 2016. Prior to that time only a few sporadic cases were reported in the preceding weeks. Between November 1, 2016 and February 16, 2017 (the last date of FAO reported cases), the FAO has noted 437 cases of human H7N9. On November 1, 2016, the WHO count of human H7N9 cases was 800. The most recent WHO Disease Outbreak News H7N9 reports a total of 1223 confirmed H7N9 cases, indicating a total of 423 cases since November 1, 2016. The WHO case counts however only includes cases reported through February 14, 2017.

Prior to November 1, 2016, the CHP reported a total of 798 cases. Since then, the CHP has reported 461 H7N9 cases through February 27, 2017. Adjusting the FAO number of cases to include 35 cases noted by CHP with reporting dates after February 16, would bring the total FAO case count through February 27 to 472 for the period from November 1, 2016 – February 27, 2017. Adding the 43 additional cases noted by CHP (and not yet reported by WHO) to the WHO-reported count of 421 gives a total of 465 confirmed cases for the period of November 1, 2016- February 27, 2017. The variations between the adjusted counts of these three agencies is minimal, the average is 466 cases. Based on these data, the WHO count of H7N9 cases through February 27 should eventually be reported to be about 1267 cases.

The differences between the H7N9 case counts among these three agencies are primarily a function of differential reporting dates, and not the result of confusion about the number of cases by Chinese public health officials.

Another question to ask is how accurate is this count of H7N9 cases from China. In the past, China has been accused of underreporting infectious diseases to the WHO. Could there be hundreds of more human H7N9 cases that are not being reported to the WHO?

We can compare the sex ratio and median age of the 461 cases noted by the CHP in this outbreak with the sex ratio and median age reported for the previous 792 confirmed H7N9 cases prior to November 1, 2016. For the cases prior to November 1, 2016, males represent 68% of the cases, and females represent 32% of the cases. In the current outbreak, males represent 71% of the cases and females represent 29% cases. These numbers are within the range of statistical variation.

For the cases prior to November 1, 2016, males had a median age of 58 and females had a median age of 55. For the cases in the current outbreak, males have a median age of 58 and females a median age of 56. The median age for both males and females is comparable from the cases in this outbreak to all of the previous H7N9 cases reported.

Thus, there is no reason to assume that China has been underreporting H7N9 cases during this outbreak. Hypothetically, in order for China to be underreporting current H7N9 cases, the public health authorities would have to be implementing a sophisticated real-time algorithm that would allow cases to be underreported, yet still maintain the male to female ratio and the average median age for the remaining cases. Because China is reporting new H7N9 cases every few days, it does not seem possible for China to be purposefully underreporting cases of H7N9 in this outbreak. Internet claims of hundreds of unreported human H7N9 cases in China are unfounded.